DreEX0022817 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28768629-28775325:-
Coord C1 exon
chr24:28775239-28775325
Coord A exon
chr24:28773139-28773237
Coord C2 exon
chr24:28768629-28768691
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACTTTGAAACTTGCTGTAGTCT
3' ss Score
2.94
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
TACACAACTCCTGTTGAATATGGTGATTTATATGATTATTACGAGGGAGGCACACCCACAGCGACTGATGAGTTTTCTGAGCCGCAG
Seq A exon
TCTAACAATGTAGATGGAGAGTACTATACAGACAGTGAACTTGACTACGGAACAGTAGATGCTTCCAAAACGCCTGTCGCAACCACTGGACCAAACAAG
Seq C2 exon
CTGGGTGGAGGTGCTGCTCTTGGTCAGAAAGGTGAGAAAGGAGAGCCTGCAGTGATTGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165_MULTIEX2-3/4=1-C2
Average complexity
ME(2-3[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=0.970 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTATTACGAGGGAGGCACAC
R:
TGGTTCAATCACTGCAGGCTC
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]