RnoEX0022771 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216930648-216933422:+
Coord C1 exon
chr2:216930648-216930764
Coord A exon
chr2:216931333-216931425
Coord C2 exon
chr2:216933168-216933422
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGAATTTATCATCAGGCA
3' ss Score
6.42
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
TATGCACCTGAGGATATAATCGAGTATGACTATGAATATGGGGAGACAGACTATAAAGAGGCTGAGAGTGTAACAGAGATGCCCACTGTCACTGAAGAAACAGTAGCACAAACTGAG
Seq A exon
GCAAATATTGTGGATGACTTTCAAGACTATAACTATGGAACGATGGAAACTTACCAGACTGAGTCTCCTCGGCGGGTATCAGGATCAAATGAG
Seq C2 exon
CCAAATCCAGTTGAAGAAGGTTTTACTGAAGAATATCTAACCGGAGAGGATTATGATGTCCAGAGAAACATTTCCGAGGATATTCTGTATGGAAACAAAGGAATAGACGGCAGGGATTCTGATCTGCTGGTAGATGGAGATTTAGGTGAATATGATTTTTATGAATACAAAGAATATGAAGAAAGGACTACGACCTCCCCTAATGAAGAATTTGGCCCAGGTGTCCCAGCAGAAACTGATTTCACAGAAACAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'8-11,'8-10,10-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.935 C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGATGCCCACTGTCACT
R:
CAGCAGATCAGAATCCCTGCC
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]