GgaEX1016308 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11936859-11940200:+
Coord C1 exon
chr8:11936859-11936975
Coord A exon
chr8:11937607-11937702
Coord C2 exon
chr8:11939955-11940200
Length
96 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTCTTTAATATTAGGCA
3' ss Score
6.36
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TACACACCAGAAGATTTTATCGAATATGACTATGAGTATGGGGATGCAGATTATAAAGAAACTGAGTCTGTAACAGAGGGACCCCCACTGTTTGAAGAGACAATAGCACAAACAGAG
Seq A exon
GCAAACATTGTTGATGAATTTCAAGAATATAGCGTAGCTGGAAATGACTATGGGCCCCGGACAGAAGCACCCTCCAGAACTACTGAAGCCAATGAG
Seq C2 exon
CAAAAACCTGTTGAAGAAGTATTTGCTGAAGAATACATAACTGGAGAGGATTATGATAAAAAAACTGAGGAAACTGAATATGGAAGCAGAGGAGTAGACCTCAGTGAATCTGATCTTCTGGTAGATGGAGATTTAGGCGAATATGATTTTTATGAATATAAAGAATATGAAGAGAAACCGACTGATTCTACTAATGAGGAGTTTGGTCCAGGTGTTCCTGCAGAGACTGATATCACAGAAACAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'6-8,'6-7,9-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.875 C2=0.945
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCCACTGTTTGAAGAG
R:
TCGCCTAAATCTCCATCTACCAGA
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]