BtaEX6016298 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40529561-40532266:+
Coord C1 exon
chr3:40529561-40529713
Coord A exon
chr3:40529902-40529991
Coord C2 exon
chr3:40532012-40532266
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGAATTCACTATTAGGCA
3' ss Score
5.44
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAAAGAAATTCAGTTTCAAAATGAAGATGAAGACAGTGGCCACTAATTCAAAGAAAAAGTCCAAAAAGTTTACACCCCCTAAATCTGAAAAATTTGCATCCAAGAAGAAGAAAACTTATCAAGCAGCAGCAATGGCCAAGCTAGGGGTAAAG
Seq A exon
GCAAATATTGTTGATGATTTTCAAGAATACAACTATGGGACAGAAAGTTACCAGACGGAAGCTCCTAGGAGTGTATCTGGATCAAATGAG
Seq C2 exon
CCAAATCCAGTTGAAGAAGTATTTACTGAAGAATATCTAACTGGAGAGGATTATGATTCCCAGAGGAAAAATTCTGAGGATATGCTATATGAAAACAAACAAATAGACGGCAGGGACTCTGATCTTCTGGTAGATGGAGATTTAGGCGAATATGATTTTTATGAATATAAGGAATATGAAGATAAACCAACAAGTCCCACTAATGAAGAATTTGGTCCAGGTGTTCCAGCAGAAACAGATATCACAGAAACAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'8-8,'8-7,9-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.633 C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAAGCAGCAGCAATGGCC
R:
ACCAGAAGATCAGAGTCCCTGC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]