MmuEX6073600 @ mm9
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:113797435-113800172:+
Coord C1 exon
chr3:113797435-113797551
Coord A exon
chr3:113798119-113798211
Coord C2 exon
chr3:113799918-113800172
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGAATTTATCATCAGGCA
3' ss Score
6.42
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
TATGCACCTGAGGATATAATCGAGTATGACTATGAATATGGGGAGACAGACTATAAAGAGGCTGAGAGTGTAACAGAGATGCCTACTTTTACTGAAGAAACAGTAGCACAAACAGAG
Seq A exon
GCAAATATTGTGGATGATTTTCAAGACTACAACTATGGAACAATGGAACCTTACCAGACTGAGACTCCTAGGCGGGTATCAGGATCGAATGAG
Seq C2 exon
CCAAATCCAGTTGAAGAAGGTTTTACTGAAGAATATCTAACCGGAGAGGATTATGATGTCCAGAGAAACACTTCCGAGGATATTCTGTACGGGAACAAAGGAGTAGACGGCAGGGATTCTGATCTCCTGGTAGATGGAGATTTAGGTGAATATGATTTTTATGAATACAAAGAATATGAAGAAAGGACTACGACCTCCCCTAATGAAGAATTTGGCCCAGGTGTCCCAGCAGAAACTGATTTCACAGAAACAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966-'5-7,'5-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=0.895 C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGAGTGTAACAGAGATGCC
R:
GAATCCCTGCCGTCTACTCCT
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: