DreEX6026127 @ danRer10
Exon Skipping
Gene
ENSDARG00000009014 | col11a1b
Description
collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
Coordinates
chr2:15838232-15842553:-
Coord C1 exon
chr2:15842455-15842553
Coord A exon
chr2:15841726-15841809
Coord C2 exon
chr2:15838232-15838534
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTGTGATGTTTACTTATAGCCC
3' ss Score
7.62
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TACAATCCCGAATACTCAGATGCATATGGGTTCTATGAATACACAGATGAAGTGACTGCCACTGAAAATCCCACTGACAACGTTCGTACTGACACCAAG
Seq A exon
CCCAGCACTGTCGACACTGGAGACTACTATGTTGAGCAGGATTACGGCACTGAAGCTCCTTCTGTTTCCAATCCAGCCAATGAG
Seq C2 exon
AATCCATCACCGAAAGAGGAAATAGTAGACGACTACATTACAGGCGTAGAACAAGTTGGCGTGGATGCCACCGCCGCCACCGAGGAGAGTGTGAAATATGTGGAGTCCAAAAGCACAAATGGAGGCGAAACCGAGGACTTTAAGGAATACGACCTTAACACATATGATGCAAAAGAGATAGACCCCAGCAATTATGATGATTCCTTCTATGACTACACTAATGGAGTAAAACCCACCGGATCAACCTATGAGGACGAGATTGGACCTGGACGACCTGCGGAAACTGAGGTCACTGAGAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009014-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCACTGACAACGTTCGT
R:
CTCGGTTTCGCCTCCATTTGT
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]