DreEX0022815 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28773139-28778041:-
Coord C1 exon
chr24:28777916-28778041
Coord A exon
chr24:28775239-28775325
Coord C2 exon
chr24:28773139-28773237
Length
87 bp
Sequences
Splice sites
3' ss Seq
CATCCTCTCCCTATGTGCAGTAC
3' ss Score
7.84
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGTGATATACAACAACTGCTGATTGTGGCTGACCCTAAAGCAGCTTACGACTACTGTGAACATTACAGCCCAGACTGTGACGTCCCTCACAAGGACACACTGCAGGCACAGGAGCCCGGAGAGGAG
Seq A exon
TACACAACTCCTGTTGAATATGGTGATTTATATGATTATTACGAGGGAGGCACACCCACAGCGACTGATGAGTTTTCTGAGCCGCAG
Seq C2 exon
TCTAACAATGTAGATGGAGAGTACTATACAGACAGTGAACTTGACTACGGAACAGTAGATGCTTCCAAAACGCCTGTCGCAACCACTGGACCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165_MULTIEX2-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.683 C2=0.970
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(7.7=21.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGCTGACCCTAAAGCAG
R:
ACAGGCGTTTTGGAAGCATCT
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]