BtaEX0009530 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40529179-40529991:+
Coord C1 exon
chr3:40529179-40529295
Coord A exon
chr3:40529561-40529713
Coord C2 exon
chr3:40529902-40529991
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTTTCACCACATTTTACAGAAA
3' ss Score
6.91
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
TATGCACCTGAGGATATAATGGAATATGACTATGAGTATGGGGAAGCAGAATATAAAGAGGCTGAGAGTGTAACAGAGACACCCACTGTAACTGAGGAGACAATAGCACAAACTGAG
Seq A exon
AAAAAGAAATTCAGTTTCAAAATGAAGATGAAGACAGTGGCCACTAATTCAAAGAAAAAGTCCAAAAAGTTTACACCCCCTAAATCTGAAAAATTTGCATCCAAGAAGAAGAAAACTTATCAAGCAGCAGCAATGGCCAAGCTAGGGGTAAAG
Seq C2 exon
GCAAATATTGTTGATGATTTTCAAGAATACAACTATGGGACAGAAAGTTACCAGACGGAAGCTCCTAGGAGTGTATCTGGATCAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.255 C2=0.633
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCACCTGAGGATATAATGGAA
R:
TTGATCCAGATACACTCCTAGGAGC
Band lengths:
202-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development