DreEX0022838 @ danRer10
Exon Skipping
Gene
ENSDARG00000009014 | col11a1b
Description
collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
Coordinates
chr2:15841726-15849630:-
Coord C1 exon
chr2:15849505-15849630
Coord A exon
chr2:15842455-15842553
Coord C2 exon
chr2:15841726-15841809
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCATTCATCTCTCTCTCAGTAC
3' ss Score
7.19
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGGGACATCCAGCAACTTCTTCTGGTGGCGGATCCTCGTGCAGCCTACGACTACTGTGAACACTACAGCCCTGACTGTGAAACCCCTCACCAGGACACTCCACAGGCCCAGGAACCCGAGGAAGAG
Seq A exon
TACAATCCCGAATACTCAGATGCATATGGGTTCTATGAATACACAGATGAAGTGACTGCCACTGAAAATCCCACTGACAACGTTCGTACTGACACCAAG
Seq C2 exon
CCCAGCACTGTCGACACTGGAGACTACTATGTTGAGCAGGATTACGGCACTGAAGCTCCTTCTGTTTCCAATCCAGCCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009014_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.939 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(7.6=21.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCTTCTGGTGGCGGAT
R:
GGAGCTTCAGTGCCGTAATCC
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]