GgaEX0007146 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10186400-10200644:+
Coord C1 exon
chr8:10186400-10186528
Coord A exon
chr8:10200214-10200360
Coord C2 exon
chr8:10200549-10200644
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCATAACATTTGCAGAAA
3' ss Score
6.32
5' ss Seq
GGGGTAAAA
5' ss Score
2.56
Exon sequences
Seq C1 exon
GGTGAGATCCAACAGTTGTTGATTATAGCTGACCCTAGAGCTGCATATGACTATTGCGAACATTATAGTCCAGACTGTGATTCCCCAGTGCCTAATGCTGCTCAGGCTCAAGATCCTCAAGTTGATGAG
Seq A exon
AAAAGGAAAGCCATGGTCAAAAAGAAGAAGAGGACAGTGGCCACTAGCTCAAAGGACAAATCCCAAAAGGCCACAACAAAAAAATCTGAAAAATATGCATCCAAGAAGAAGAAAAGTTATCAAGCAGCAACAAAAGACAAACTAGGG
Seq C2 exon
GCAAACATTGTTGATGAATTTCAAGAATATAGCGTAGCTGGAAATGACTATGGGCCCCGGACAGAAGCACCCTCCAGAACTACTGAAGCCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180_MULTIEX3-4/26=1-5
Average complexity
C3
Mappability confidence:
96%=100=96%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.938
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(6.8=18.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGTTGTTGATTATAGCTGACCCT
R:
TGGCTTCAGTAGTTCTGGAGGG
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]