GgaEX0007146 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11923458-11937702:+
Coord C1 exon
chr8:11923458-11923586
Coord A exon
chr8:11937272-11937424
Coord C2 exon
chr8:11937607-11937702
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCATAACATTTGCAGAAA
3' ss Score
6.32
5' ss Seq
AAAGTAGCA
5' ss Score
-2.94
Exon sequences
Seq C1 exon
GGTGAGATCCAACAGTTGTTGATTATAGCTGACCCTAGAGCTGCATATGACTATTGCGAACATTATAGTCCAGACTGTGATTCCCCAGTGCCTAATGCTGCTCAGGCTCAAGATCCTCAAGTTGATGAG
Seq A exon
AAAAGGAAAGCCATGGTCAAAAAGAAGAAGAGGACAGTGGCCACTAGCTCAAAGGACAAATCCCAAAAGGCCACAACAAAAAAATCTGAAAAATATGCATCCAAGAAGAAGAAAAGTTATCAAGCAGCAACAAAAGACAAACTAGGGGTAAAA
Seq C2 exon
GCAAACATTGTTGATGAATTTCAAGAATATAGCGTAGCTGGAAATGACTATGGGCCCCGGACAGAAGCACCCTCCAGAACTACTGAAGCCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.449 C2=0.875
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(6.8=18.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGTTGTTGATTATAGCTGACCCT
R:
TGGCTTCAGTAGTTCTGGAGGG
Band lengths:
210-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]