MmuEX0012121 @ mm10
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:114090132-114095293:+
Coord C1 exon
chr3:114090132-114090257
Coord A exon
chr3:114094861-114095013
Coord C2 exon
chr3:114095201-114095293
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTTTCATGACATTTTACAGAAA
3' ss Score
6.32
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
Exon sequences
Seq C1 exon
GGTGATATTCAGCAGTTCCTGATCACAGGAGACCCCAAGGCAGCATACGACTACTGTGACCATTACAGTCCAGATTGTGACTTAACATCCAAGGCTGCCCAGGCTCAGGAGCCTCACATTGATGAG
Seq A exon
AAAAAGAAATCCAATTACACAAAGAAGAAGAGGACATTGACCACTAACTCAAAGAAAAAAACTAAAAAGTTCACATCCCCCAAATCTGAAAAATTTGCATCCAAGAAGAAGAAACGTAATCCAGCCACAGCCAAAGCCAAACTAGGGGTCCAG
Seq C2 exon
GCAAATATTGTGGATGATTTTCAAGACTACAACTATGGAACAATGGAACCTTACCAGACTGAGACTCCTAGGCGGGTATCAGGATCGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.333 A=0.824 C2=0.882
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(8.1=23.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATATTCAGCAGTTCCTGA
R:
TCATTCGATCCTGATACCCGC
Band lengths:
218-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types