DreEX0022816 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28768629-28775325:-
Coord C1 exon
chr24:28775239-28775325
Coord A exon
chr24:28773446-28773610
Coord C2 exon
chr24:28768629-28768691
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCACCATAACCTTTTTCCAGAGA
3' ss Score
6.65
5' ss Seq
GGGGTAATA
5' ss Score
4.06
Exon sequences
Seq C1 exon
TACACAACTCCTGTTGAATATGGTGATTTATATGATTATTACGAGGGAGGCACACCCACAGCGACTGATGAGTTTTCTGAGCCGCAG
Seq A exon
AGAGTGAAACGTAGTGTCTCCATGAAATCCAAGAGGACAAAAAAGTCCCCTAAATCTTTTGCCAAACCCTATAAGTACCTGGAGCCAAAACAGGCTAAAAAGTTAGTGCCTAAGAAGAAGAGATACGGATACCTGCCACCAACACCAAGACAAGCCATTCTAGGG
Seq C2 exon
CTGGGTGGAGGTGCTGCTCTTGGTCAGAAAGGTGAGAAAGGAGAGCCTGCAGTGATTGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165_MULTIEX2-2/4=1-C2
Average complexity
ME(2-3[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=0.709 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATATGATTATTACGAGGGAGGCACA
R:
TGGTTCAATCACTGCAGGCTC
Band lengths:
122-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]