RnoEX0022772 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216931333-216934075:+
Coord C1 exon
chr2:216931333-216931425
Coord A exon
chr2:216933168-216933422
Coord C2 exon
chr2:216934013-216934075
Length
255 bp
Sequences
Splice sites
3' ss Seq
CCTGCAATTTAAATGAATAGCCA
3' ss Score
1.84
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCAAATATTGTGGATGACTTTCAAGACTATAACTATGGAACGATGGAAACTTACCAGACTGAGTCTCCTCGGCGGGTATCAGGATCAAATGAG
Seq A exon
CCAAATCCAGTTGAAGAAGGTTTTACTGAAGAATATCTAACCGGAGAGGATTATGATGTCCAGAGAAACATTTCCGAGGATATTCTGTATGGAAACAAAGGAATAGACGGCAGGGATTCTGATCTGCTGGTAGATGGAGATTTAGGTGAATATGATTTTTATGAATACAAAGAATATGAAGAAAGGACTACGACCTCCCCTAATGAAGAATTTGGCCCAGGTGTCCCAGCAGAAACTGATTTCACAGAAACAAGC
Seq C2 exon
ATCAATGGCCATGGCGCATATGGAGAGAAAGGGCAGAAGGGGGAACCTGCTGTAGTTGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.953 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(1.7=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATATTGTGGATGACTTTCAAGA
R:
GGGTTCAACTACAGCAGGTTCC
Band lengths:
156-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]