BtaEX0009533 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40540312-40542507:+
Coord C1 exon
chr3:40540312-40540395
Coord A exon
chr3:40541571-40541616
Coord C2 exon
chr3:40542451-40542507
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTATAATTCCAATTTTTCAGATA
3' ss Score
8.31
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTTCGTTATGGCGGTGATAGTTCCAAAGGACCAACCGTCTCTGCTCAGGAAGCTCAGGCCCAGGCCATTCTTCAGCAGGCTCGG
Seq A exon
ATATTTAATCTCAAGGATTAAGAAGTGTATTGTCAAAAATCTCATG
Seq C2 exon
ATTGCTCTGAGAGGTCCACCTGGCCCAATGGGTCTGACTGGAAGACCGGGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.667 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(25.8=84.2)
Main Inclusion Isoform:
ENSBTAT00000028276fB1827
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTATGGCGGTGATAGTTCCA
R:
GACCCGGTCTTCCAGTCAGAC
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development