Special

FBgn0000299 @ dm6

Biotype
protein_coding
Gene Symbol
Cg25C
Description
The gene Collagen type IV alpha 1 is referred to in FlyBase by the symbol DmelCol4a1 (CG4145, FBgn0000299). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 2L:5029609..5037279. Its molecular function is described by: extracellular matrix structural constituent. It is involved in the biological process described with 8 unique terms, many of which group under: system development; cellular component organization or biogenesis; extracellular structure organization; tube morphogenesis; cellular component organization. 63 alleles are reported. The phenotypes of these alleles manifest in: adult circular muscle; intracellular membrane-bounded organelle; intracellular; epithelium; neuropil. The phenotypic classes of alleles include: phenotype; increased mortality during development; stress response defective; some die during larval stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult female stages.
Coordinates
chr2L:5029609-5037279:+
Assembly
dm6

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
22.81
60.13
0
Alternative 5'ss
110
chr2L:5029637-5029746
+
13.5
29.39
0
Alternative 5'ss
174
chr2L:5029637-5029810
+
63.69
62.68
0
Intron Retention
326
chr2L:5029811-5030136
+
9.96
44.62
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000080573 COL5A3 2-to-17
Human hg38 ENSG00000108821 COL1A1 2-to-17
Human hg38 ENSG00000130635 COL5A1 2-to-17
Human hg38 ENSG00000187498 COL4A1 2-to-17
Human hg38 ENSG00000196739 COL27A1 2-to-17
Human hg19 ENSG00000080573 COL5A3 2-to-17
Human hg19 ENSG00000108821 COL1A1 2-to-17
Human hg19 ENSG00000130635 COL5A1 2-to-17
Human hg19 ENSG00000187498 COL4A1 2-to-17
Human hg19 ENSG00000196739 COL27A1 2-to-17
Mouse mm10 ENSMUSG00000027966 Col11a1 2-to-17
Mouse mm10 ENSMUSG00000031273 Col4a6 2-to-17
Mouse mm10 ENSMUSG00000031274 Col4a5 2-to-17
Mouse mm10 ENSMUSG00000045672 Col27a1 2-to-17
Mouse mm10 ENSMUSG00000067158 Col4a4 2-to-17
Mouse mm9 ENSMUSG00000027966 Col11a1 2-to-17
Mouse mm9 ENSMUSG00000031273 Col4a6 2-to-17
Mouse mm9 ENSMUSG00000031274 Col4a5 2-to-17
Mouse mm9 ENSMUSG00000045672 Col27a1 2-to-17
Mouse mm9 ENSMUSG00000067158 Col4a4 2-to-17
Cow bosTau6 ENSBTAG00000013472 COL1A2 2-to-16
Cow bosTau6 ENSBTAG00000021310 COL4A4 2-to-16
Cow bosTau6 ENSBTAG00000021466 COL3A1 2-to-16
Cow bosTau6 ENSBTAG00000025210 COL4A2 2-to-16
Cow bosTau6 ENSBTAG00000047998 COL5A1 2-to-16
Chicken galGal4 ENSGALG00000002546 COL5A1 2-to-17
Chicken galGal4 ENSGALG00000008141 COL4A5 2-to-17
Chicken galGal4 ENSGALG00000009641 COL1A2 2-to-17
Chicken galGal3 ENSGALG00000002546 Q90689_CHICK 2-to-17
Chicken galGal3 ENSGALG00000008141 COL4A5 2-to-17
Chicken galGal3 ENSGALG00000009641 COL1A2 2-to-17
Zebrafish danRer10 ENSDARG00000002295 si:dkey-21p1.3 2-to-24
Zebrafish danRer10 ENSDARG00000012405 col1a1a 2-to-24
Zebrafish danRer10 ENSDARG00000026165 col11a1a 2-to-24
Zebrafish danRer10 ENSDARG00000035809 col1a1b 2-to-24
Zebrafish danRer10 ENSDARG00000099930 col27a1b 2-to-24
Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"