Special

ENSMUSG00000045672 @ mm9

Biotype
protein_coding
Gene Symbol
Col27a1
Description
collagen, type XXVII, alpha 1 [Source:MGI Symbol;Acc:MGI:2672118]
Coordinates
chr4:62875038-62996025:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
86.89
37.35
0
Alternative 3'ss
37
chr4:62985428-62985464
+
13.11
37.35
0
Alternative 3'ss
0
NA
+
21.27
20.86
0
Alternative 3'ss
3
chr4:62989566-62989568
+
78.73
20.86
0
Alternative 5'ss
0
NA
+
17.47
24.19
0
Alternative 5'ss
4
chr4:62915373-62915376
+
82.53
24.19
0
Alternative 5'ss
0
NA
+
26.52
32.03
0
Alternative 5'ss
8
chr4:62919223-62919230
+
73.48
32.03
0
Alternative 5'ss
0
NA
+
22.01
20.57
0
Alternative 5'ss
8
chr4:62934138-62934145
+
78
20.57
0
Exon Skipping
54
chr4:62954235-62954288
+
94.87
38.3
0
Intron Retention
1351
chr4:62942332-62943682
+
11.41
45.95
0
Intron Retention
639
chr4:62988930-62989568
+
15.48
54.66
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000196739 COL27A1 1-to-1
Human hg19 ENSG00000196739 COL27A1 1-to-1
Rat rn6 ENSRNOG00000007657 Col27a1 1-to-1
Cow bosTau6 ENSBTAG00000019807 COL27A1 1-to-1
Chicken galGal4 ENSGALG00000006958 1-to-1
Chicken galGal3 ENSGALG00000006958 COL27A1 1-to-1
Zebrafish danRer10 ENSDARG00000099930 col27a1b 1-to-2
Zebrafish danRer10 ENSDARG00000101258 COL27A1 (2 of 2) 1-to-2
Fruitfly dm6 FBgn0000299 Cg25C 17-to-2
Fruitfly dm6 FBgn0016075 vkg 17-to-2