MmuEX0012262 @ mm9
Exon Skipping
Gene
ENSMUSG00000045672 | Col27a1
Description
collagen, type XXVII, alpha 1 [Source:MGI Symbol;Acc:MGI:2672118]
Coordinates
chr4:62952557-62954557:+
Coord C1 exon
chr4:62952557-62952610
Coord A exon
chr4:62954235-62954288
Coord C2 exon
chr4:62954504-62954557
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTTGCTGTTTCCATCACAGGGA
3' ss Score
9.91
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGGCTTATGGGATTCATTGGTCTTGTCGGAGAGCCTGGAATTGTTGGGGAGAAG
Seq A exon
GGAGACCGTGGGGTGATGGGACCCCCAGGTGCACCTGGACCCAAGGGGTCGATG
Seq C2 exon
GGCCATCCTGGAACACCCGGTGGTATTGGGAACCCTGGAGAGCCTGGACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045672_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.3=100),PF0139113=Collagen=PU(3.3=11.1)
A:
PF0139113=Collagen=FE(19.3=100),PF0139113=Collagen=FE(27.9=100)
C2:
PF0139113=Collagen=PD(6.8=33.3),PF0139113=Collagen=FE(27.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTATGGGATTCATTGGTCT
R:
CCAGGGTCCAGGCTCTCC
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: