Special

ENSG00000196739 @ hg19

Biotype
protein_coding
Gene Symbol
COL27A1
Description
collagen, type XXVII, alpha 1 [Source:HGNC Symbol;Acc:22986]
Coordinates
chr9:116917840-117074791:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
35.42
64.84
0
Alternative 5'ss
8
chr9:116994139-116994146
+
64.58
64.84
0
Alternative 5'ss
0
NA
+
93.96
12.5
0
Alternative 5'ss
7
chr9:117014927-117014933
+
6.04
12.5
0
Exon Skipping
54
chr9:117031521-117031574
+
95.82
27.69
0
Exon Skipping
54
chr9:116956684-116956737
+
78.4
55.01
0
Intron Retention
8764
chr9:116973307-116982070
+
12.71
66.47
0
Intron Retention
3732
chr9:116994147-116997878
+
8.44
72.77
0
Intron Retention
1699
chr9:117002768-117004466
+
7.2
37.4
0
Intron Retention
4704
chr9:117008191-117012894
+
33.51
70.53
0
Intron Retention
1683
chr9:117029838-117031520
+
19.64
54.26
0
Intron Retention
1433
chr9:117031575-117033007
+
7.38
33.9
0
Intron Retention
501
chr9:117062404-117062904
+
7.12
51.72
0
Intron Retention
219
chr9:117063743-117063961
+
6.8
21.04
0
Intron Retention
9089
chr9:116958293-116967381
+
4.88
33.28
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000045672 Col27a1 1-to-1
Mouse mm9 ENSMUSG00000045672 Col27a1 1-to-1
Rat rn6 ENSRNOG00000007657 Col27a1 1-to-1
Cow bosTau6 ENSBTAG00000019807 COL27A1 1-to-1
Chicken galGal4 ENSGALG00000006958 1-to-1
Chicken galGal3 ENSGALG00000006958 COL27A1 1-to-1
Zebrafish danRer10 ENSDARG00000099930 col27a1b 1-to-2
Zebrafish danRer10 ENSDARG00000101258 COL27A1 (2 of 2) 1-to-2
Fruitfly dm6 FBgn0000299 Cg25C 17-to-2
Fruitfly dm6 FBgn0016075 vkg 17-to-2