Special

ENSMUSG00000045672 @ mm10

Biotype
protein_coding
Gene Symbol
Col27a1
Description
collagen, type XXVII, alpha 1 [Source:MGI Symbol;Acc:MGI:2672118]
Coordinates
chr4:63214004-63334991:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
86.88
37.2
0
Alternative 3'ss
37
chr4:63324394-63324430
+
13.12
37.2
0
Alternative 3'ss
0
NA
+
21.52
24.52
0
Alternative 3'ss
3
chr4:63328532-63328534
+
78.48
24.52
0
Alternative 5'ss
0
NA
+
17.06
24.19
0
Alternative 5'ss
4
chr4:63254339-63254342
+
82.94
24.19
0
Alternative 5'ss
0
NA
+
26.1
32.03
0
Alternative 5'ss
8
chr4:63258189-63258196
+
73.72
32.03
0
Alternative 5'ss
0
NA
+
21.9
19.34
0
Alternative 5'ss
8
chr4:63273104-63273111
+
78.1
19.34
0
Exon Skipping
54
chr4:63293201-63293254
+
94.57
34.95
0
Exon Skipping
28
chr4:63312690-63312717
+
1.68
41.67
0
Intron Retention
1351
chr4:63281298-63282648
+
10.93
45.95
0
Intron Retention
639
chr4:63327896-63328534
+
18.62
56.04
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000196739 COL27A1 1-to-1
Human hg19 ENSG00000196739 COL27A1 1-to-1
Rat rn6 ENSRNOG00000007657 Col27a1 1-to-1
Cow bosTau6 ENSBTAG00000019807 COL27A1 1-to-1
Chicken galGal4 ENSGALG00000006958 1-to-1
Chicken galGal3 ENSGALG00000006958 COL27A1 1-to-1
Zebrafish danRer10 ENSDARG00000099930 col27a1b 1-to-2
Zebrafish danRer10 ENSDARG00000101258 COL27A1 (2 of 2) 1-to-2
Fruitfly dm6 FBgn0000299 Cg25C 17-to-2
Fruitfly dm6 FBgn0016075 vkg 17-to-2