GgaEX6014990 @ galGal3
Exon Skipping
Gene
ENSGALG00000006958 | COL27A1
Description
NA
Coordinates
chr17:5374642-5378794:+
Coord C1 exon
chr17:5374642-5374695
Coord A exon
chr17:5377170-5377223
Coord C2 exon
chr17:5378741-5378794
Length
54 bp
Sequences
Splice sites
3' ss Seq
CAAACCTTTGTCTCTCCCAGGGT
3' ss Score
9.07
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGTCTAATGGGATTCATTGGTCCAGTAGGGGAGCCTGGAATAGTGGGAGAAAAG
Seq A exon
GGTGACCGTGGCTCAGTGGGACCCCCAGGCCCTCCTGGAGTCAAGGGGTCGATG
Seq C2 exon
GGGCACCCTGGGATACCAGGAGCAGTGGGTTTTCCCGGCATCCCCGGACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-'37-34,'37-33,38-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(20.0=88.9),PF0139113=Collagen=FE(21.5=100)
A:
PF0139113=Collagen=FE(21.5=100)
C2:
PF0139113=Collagen=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTAATGGGATTCATTGGTCCA
R:
CGGGGATGCCGGGAAAAC
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]