BtaEX0009673 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105248735-105249764:+
Coord C1 exon
chr8:105248735-105248788
Coord A exon
chr8:105249422-105249475
Coord C2 exon
chr8:105249711-105249764
Length
54 bp
Sequences
Splice sites
3' ss Seq
AATTGCTGTCTCCATCACAGGGT
3' ss Score
7.88
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGACTTCTGGGATTCGTTGGTCTGGTCGGAGAGCCAGGAATCATGGGAGAAAAG
Seq A exon
GGTGACCGGGGCATGATGGGACCCCCAGGCGCGCCCGGACCCAAGGGGTCGATG
Seq C2 exon
GGCCATCCTGGAATCCCAGGTGTGGTGGGAAACCCGGGAGAGCCTGGACCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCTGGGATTCGTTGGT
R:
CGGAGGTCCAGGCTCTCC
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development