GgaEX6014990 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4736911-4740632:+
Coord C1 exon
chr17:4736911-4736964
Coord A exon
chr17:4739439-4739492
Coord C2 exon
chr17:4740579-4740632
Length
54 bp
Sequences
Splice sites
3' ss Seq
CAAACCTTTGTCTCTCCCAGGGT
3' ss Score
9.07
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGTCTAATGGGATTCATTGGTCCAGTAGGGGAGCCTGGAATAGTGGGAGAAAAG
Seq A exon
GGTGACCGTGGCTCAGTGGGACCCCCAGGCCCTCCTGGAGTCAAGGGGTCGATG
Seq C2 exon
GGGCACCCTGGGATACCAGGAGCAGTGGGTTTTCCCGGCATCCCCGGACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-'32-27,'32-26,33-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTAATGGGATTCATTGGTCCA
R:
CGGGGATGCCGGGAAAAC
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]