Special

ENSDARG00000012405 @ danRer10

Biotype
protein_coding
Gene Symbol
col1a1a
Description
collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
Coordinates
chr3:23090499-23108910:+
Assembly
danRer10

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]


EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
889
chr3:23106381-23107269
+
9.07
8.31
0
Exon Skipping
99
chr3:23096867-23096965
+
88.06
18.91
0
Exon Skipping
45
chr3:23097060-23097104
+
86.66
21.61
0
Exon Skipping
99
chr3:23097783-23097881
+
87.39
25.7
0
Exon Skipping
54
chr3:23097971-23098024
+
87.95
28.62
0
Exon Skipping
108
chr3:23098226-23098333
+
88.55
23.73
0
Exon Skipping
54
chr3:23098431-23098484
+
89.98
19.6
0
Exon Skipping
99
chr3:23098579-23098677
+
91.5
19.45
0
Exon Skipping
54
chr3:23098776-23098829
+
93.11
18.68
0
Exon Skipping
99
chr3:23099765-23099863
+
93.28
15.61
0
Exon Skipping
54
chr3:23099956-23100009
+
92.48
15.68
0
Exon Skipping
54
chr3:23100109-23100162
+
91.53
19.01
0
Exon Skipping
54
chr3:23100413-23100466
+
90.44
23.07
0
Exon Skipping
54
chr3:23100578-23100631
+
88.61
22.16
0
Exon Skipping
45
chr3:23100771-23100815
+
88.89
23.36
0
Exon Skipping
99
chr3:23100906-23101004
+
90.89
20.02
0
Exon Skipping
108
chr3:23101161-23101268
+
93.06
15.42
0
Exon Skipping
108
chr3:23101374-23101481
+
94.17
14.68
0
Exon Skipping
54
chr3:23101589-23101642
+
93.96
15.74
0
Exon Skipping
54
chr3:23101728-23101781
+
93.27
16.57
0
Exon Skipping
108
chr3:23101869-23101976
+
92.42
16.38
0
Exon Skipping
54
chr3:23102128-23102181
+
91.36
18.98
0
Exon Skipping
54
chr3:23102274-23102327
+
92.97
17.07
0
Exon Skipping
108
chr3:23103287-23103394
+
94.15
17.72
0
Exon Skipping
54
chr3:23103503-23103556
+
93.91
16.96
0
Exon Skipping
108
chr3:23103677-23103784
+
93.62
27.18
0
Exon Skipping
54
chr3:23103874-23103927
+
93.91
28.42
0
Exon Skipping
54
chr3:23095661-23095714
+
89.72
16.72
0
Exon Skipping
45
chr3:23095800-23095844
+
88.37
20.35
0
Exon Skipping
54
chr3:23095933-23095986
+
88.29
23.8
0
Exon Skipping
45
chr3:23096235-23096279
+
88.83
26.45
0
Exon Skipping
54
chr3:23096367-23096420
+
88.82
21.35
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000108821 COL1A1 2-to-1
Human hg19 ENSG00000108821 COL1A1 2-to-1
Mouse mm10 ENSMUSG00000001506 Col1a1 2-to-1
Mouse mm9 ENSMUSG00000001506 Col1a1 2-to-1
Rat rn6 ENSRNOG00000003897 Col1a1 2-to-1
Cow bosTau6 ENSBTAG00000013103 COL1A1 2-to-1
Chicken galGal3 ENSGALG00000023973 2-to-1
Fruitfly dm6 FBgn0000299 Cg25C 24-to-2
Fruitfly dm6 FBgn0016075 vkg 24-to-2
Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"