BtaEX0009544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14911956-14913296:-
Coord C1 exon
chr9:14913177-14913296
Coord A exon
chr9:14912578-14912673
Coord C2 exon
chr9:14911956-14912102
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTCTATATGTTTAGCAA
3' ss Score
6.12
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TGGGATTACTTCCTCCTCAGAACATACACATCTCTGATGAATGGTATACCAGATTCAGGGTGTCCTGGGATCCTTCACCCTCTCCTGTTCTTGGATATAAAATTGTGTATAAGCCAGTGG
Seq A exon
CAAAATGGAAGAAATACACTCTTTGTGCTAAATTTGCTGAGGTATCTTCCATGTACTCGGGAAGGGTGTGAACCAGAAAAAGGAAAAGGAGAGAAG
Seq C2 exon
GTTCCAATGAGCCCATGGAAGTTTTTGTTGGAGAAGTGACATCATACACATTACACAATCTGAACCCCAGCACCACCTATGATGTGAATGTCTACGCTCAGTATGATTCTGGACTCAGTGTTCCTCTGACCGACCAAGGCACTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(45.1=90.2)
A:
PF0004116=fn3=PD(22.4=45.8)
C2:
PF0004116=fn3=PD(53.7=83.0)
Main Inclusion Isoform:
ENSBTAT00000026725fB1829
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCTCTCCTGTTCTTGGA
R:
TTGGTCGGTCAGAGGAACACT
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development