BtaEX0009602 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122571631-122573563:+
Coord C1 exon
chr2:122571631-122571675
Coord A exon
chr2:122572421-122572511
Coord C2 exon
chr2:122573528-122573563
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCACCTGTTTCTTCTTCCAGCCC
3' ss Score
10.57
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
GGGAAAGCTGGGGCCCCAGGGCCAACAGGGCTGAAAGGAGAAAAG
Seq A exon
CCCTTCTGATCTCCATAAATGGCACATACCCAGTTCTTCAAGCCTCCTCAAACCCCAAACCCGTCTCCACCTCATCTCCTCCATCTGACAG
Seq C2 exon
GGTAATTTCGGGGAGGTAGGGCCAGCCGGCAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100)
A:
NO
C2:
PF0139113=Collagen=FE(15.7=100)
Main Inclusion Isoform:
ENSBTAT00000038016fB1841
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGGGCTGAAAGGAGAA
R:
GGCCCTACCTCCCCGAAATTA
Band lengths:
47-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development