Special

ENSBTAG00000010050 @ bosTau6

Biotype
protein_coding
Gene Symbol
COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122557458-122611951:+
Assembly
bosTau6

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
20
chr2:122570359-122570378
+
97.64
54.15
0
Alternative 5'ss
295
chr2:122570359-122570653
+
2.32
54.15
0
Alternative 5'ss
0
NA
+
88.51
35.23
0
Alternative 5'ss
44
chr2:122592775-122592818
+
11.49
35.23
0
Exon Skipping
48
chr2:122580725-122580772
+
62.2
85.16
0
Exon Skipping
91
chr2:122572421-122572511
+
13.07
58.22
0
Exon Skipping
45
chr2:122591813-122591857
+
95.7
40.23
0
Exon Skipping
45
chr2:122592730-122592774
+
87.41
90.69
0
Intron Retention
588
chr2:122569001-122569588
+
16.76
27.02
0
Intron Retention
525
chr2:122592205-122592729
+
77.53
55.1
0
Intron Retention
1706
chr2:122592775-122594480
+
10.39
43.27
0
Intron Retention
874
chr2:122608240-122609113
+
17.48
36.03
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000084636 COL16A1 1-to-1
Human hg19 ENSG00000084636 COL16A1 1-to-1
Mouse mm10 ENSMUSG00000040690 Col16a1 1-to-1
Mouse mm9 ENSMUSG00000040690 Col16a1 1-to-1
Rat rn6 ENSRNOG00000031475 Col16a1 1-to-1
Chicken galGal4 ENSGALG00000026836 COL16A1 1-to-1
Zebrafish danRer10 ENSDARG00000009194 COL25A1 1-to-1
Fruitfly dm6 FBgn0259244 CG42342 9-to-1
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