BtaEX0009603 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122590839-122594534:+
Coord C1 exon
chr2:122590839-122590925
Coord A exon
chr2:122591813-122591857
Coord C2 exon
chr2:122594481-122594534
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCCCGTGGCTTCCTTCGCAGGGT
3' ss Score
9.46
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGGGACAACCATGAGGGAGACCCGGGCTGTGCAGGGAGCCCCGGGCTGCCGGGACCTCCGGGACTGCCTGGCCAGAGAGGAGAAGAG
Seq A exon
GGTCCACCTGGTATGAGGGGCTCCCCGGGTCCTCCAGGCCCTATT
Seq C2 exon
GGTCTTCAAGGAGAGCGAGGCCTCAGGGGCCTGACGGGAGAGAAGGGGGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050_MULTIEX2-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(45.0=93.1)
A:
PF0139113=Collagen=FE(16.7=100)
C2:
PF0139113=Collagen=PD(1.7=5.6),PF0139113=Collagen=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACAACCATGAGGGAGA
R:
CCCCTTCTCTCCCGTCAGG
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development