Special

ENSMUSG00000040690 @ mm10

Biotype
protein_coding
Gene Symbol
Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:130047840-130099283:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
96.95
77.5
0
Alternative 5'ss
239
chr4:130060985-130061223
+
2.98
75.94
0
Exon Skipping
48
chr4:130073069-130073116
+
67.88
100
0
Exon Skipping
45
chr4:130081435-130081479
+
89.8
76.69
0
Exon Skipping
100
chr4:130049327-130049426
+
5.99
75.63
0
Intron Retention
2501
chr4:130080621-130083121
+
30.95
82.87
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000084636 COL16A1 1-to-1
Human hg19 ENSG00000084636 COL16A1 1-to-1
Rat rn6 ENSRNOG00000031475 Col16a1 1-to-1
Cow bosTau6 ENSBTAG00000010050 COL16A1 1-to-1
Chicken galGal4 ENSGALG00000026836 COL16A1 1-to-1
Zebrafish danRer10 ENSDARG00000009194 COL25A1 1-to-1
Fruitfly dm6 FBgn0259244 CG42342 7-to-1