MmuEX0012168 @ mm10
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:130080576-130083175:+
Coord C1 exon
chr4:130080576-130080620
Coord A exon
chr4:130081435-130081479
Coord C2 exon
chr4:130083122-130083175
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTGCCTGTTTCTCCCACCAGGGC
3' ss Score
11.94
5' ss Seq
CCCGTAAGA
5' ss Score
5.66
Exon sequences
Seq C1 exon
GGTCCACCTGGCATGAGGGGCTCTCCCGGTCCTCCAGGCCCTATT
Seq A exon
GGCCCCCCAGGTTTTCCTGGTGCTGTTGGCTCCCCCGGATTGCCC
Seq C2 exon
GGGCTTCAAGGGGAGCGAGGCCTCACGGGCCTGACTGGAGACAAAGGAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690_MULTIEX2-1/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.2=100),PF0139113=Collagen=PU(2.8=13.3)
A:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(19.2=93.3)
C2:
PF0139113=Collagen=FE(27.0=100),PF0139113=Collagen=FE(23.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTGGCATGAGGGG
R:
CTCCTTTGTCTCCAGTCAGGC
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types