Special

ENSRNOG00000031475 @ rn6

Biotype
protein_coding
Gene Symbol
Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148257642-148311645:+
Assembly
rn6

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]


EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
73.55
39.47
0
Alternative 3'ss
18
chr5:148261390-148261407
+
26.45
39.47
0
Alternative 5'ss
0
NA
+
89.58
42.96
0
Alternative 5'ss
42
chr5:148292627-148292668
+
10.42
42.96
0
Exon Skipping
102
chr5:148259013-148259114
+
3.46
22.89
0
Exon Skipping
118
chr5:148261566-148261683
+
96.95
26.29
0
Exon Skipping
45
chr5:148272267-148272311
+
92.94
24.38
0
Exon Skipping
69
chr5:148279199-148279267
+
98.27
29.05
0
Exon Skipping
48
chr5:148283950-148283997
+
71.11
68.69
0
Exon Skipping
45
chr5:148292582-148292626
+
82.04
99.37
0
Intron Retention
973
chr5:148267024-148267996
+
2.42
84.17
0
Intron Retention
179
chr5:148288257-148288435
+
2.43
57.1
0
Intron Retention
1967
chr5:148288469-148290435
+
3.42
53.41
0
Intron Retention
1689
chr5:148292627-148294315
+
9.58
31.25
0
Intron Retention
1416
chr5:148295477-148296892
+
18.33
50.29
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000084636 COL16A1 1-to-1
Human hg19 ENSG00000084636 COL16A1 1-to-1
Mouse mm10 ENSMUSG00000040690 Col16a1 1-to-1
Mouse mm9 ENSMUSG00000040690 Col16a1 1-to-1
Cow bosTau6 ENSBTAG00000010050 COL16A1 1-to-1
Chicken galGal4 ENSGALG00000026836 COL16A1 1-to-1
Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"