RnoEX0022905 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148279001-148283147:+
Coord C1 exon
chr5:148279001-148279054
Coord A exon
chr5:148279199-148279267
Coord C2 exon
chr5:148283121-148283147
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTCCACTCCCCACAGGGA
3' ss Score
11.14
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGGCCCCCCGGACCTCGGGGACCACCTGGCTCAACCGGCGAACACGGTGCCCAG
Seq A exon
GGACCTCCAGGGCCCAAAGGAGCCACAGGACCCATGGGACCTCCTGGTGCTAGTATCTCTGGGCCTCCG
Seq C2 exon
GGCCAAAAGGGATCACGAGGAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.7=100)
A:
PF0139113=Collagen=PD(33.3=82.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCACCTGGCTCAACC
R:
TTCTCTCCTCGTGATCCCTTT
Band lengths:
63-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]