BtaEX6012359 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122577017-122579629:+
Coord C1 exon
chr2:122577017-122577070
Coord A exon
chr2:122577253-122577321
Coord C2 exon
chr2:122579576-122579629
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGGTACCCTCTCTTCCACAGGGA
3' ss Score
10.21
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GGGCTTCCGGGCCCTCGGGGACCACCTGGCCCTGCTGGAGAGAAGGGTGCCAAG
Seq A exon
GGATCTCCAGGAGTGAAAGGAGCCGCTGGGCCTGTGGGACCTCCTGGTGCCAGTGTCTCTGGGCCTCCG
Seq C2 exon
GGCCCTGATGGGCAGCAAGGACAGGCTGGACTTCCAGGAGCCAGAGGGATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'47-50,'47-49,48-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.3=100),PF0139113=Collagen=PU(22.7=94.4)
A:
PF0139113=Collagen=PD(33.3=82.6),PF0139113=Collagen=PU(8.8=21.7)
C2:
PF0139113=Collagen=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACCTGGCCCTGCTG
R:
GCATCCCTCTGGCTCCTGG
Band lengths:
87-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]