Special

ENSG00000084636 @ hg19

Biotype
protein_coding
Gene Symbol
COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32117848-32169920:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
180
chr1:32164351-32164530
-
7.7
28
0
Exon Skipping
45
chr1:32136203-32136247
-
86.49
82.6
0
Exon Skipping
48
chr1:32145405-32145452
-
51.09
96.07
0
Exon Skipping
36
chr1:32154651-32154686
-
97.89
43.57
0
Exon Skipping
124
chr1:32164084-32164207
-
95.7
20.83
0
Intron Retention
1015
chr1:32159772-32160786
-
10.74
30.36
0
Intron Retention
2166
chr1:32138442-32140607
-
12.15
49.3
0
Intron Retention
1746
chr1:32134457-32136202
-
13.44
33.1
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000040690 Col16a1 1-to-1
Mouse mm9 ENSMUSG00000040690 Col16a1 1-to-1
Rat rn6 ENSRNOG00000031475 Col16a1 1-to-1
Cow bosTau6 ENSBTAG00000010050 COL16A1 1-to-1
Chicken galGal4 ENSGALG00000026836 COL16A1 1-to-1
Zebrafish danRer10 ENSDARG00000009194 COL25A1 1-to-1
Fruitfly dm6 FBgn0259244 CG42342 8-to-1