HsaEX0016350 @ hg19
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32163507-32165531:-
Coord C1 exon
chr1:32165414-32165531
Coord A exon
chr1:32164084-32164207
Coord C2 exon
chr1:32163507-32163773
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGCTCCATCTCCAGAAG
3' ss Score
9.49
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCTTCAACCTCATCCACCGACTCAGCCTCATGAAGACGTCTGCCATCAAGAAGATCCGCAACCCCAAGGGGCCTCTCATCCTGCGCCTGGGGGCGGCCCCCGTGACCCAGCCCACGCG
Seq A exon
AAGAGTATTCCCTCGGGGTCTCCCGGAGGAGTTTGCCCTGGTGCTGACACTACTGCTGAAGAAACACACCCACCAGAAGACGTGGTATCTGTTTCAAGTGACCGATGCAAATGGGTATCCACAG
Seq C2 exon
ATATCCCTGGAAGTCAACAGCCAAGAGCGGAGCCTGGAGCTCAGGGCCCAGGGCCAGGATGGCGACTTTGTGTCCTGCATCTTCCCAGTGCCCCAGCTCTTCGACTTGCGTTGGCACAAGCTGATGCTGAGTGTGGCTGGACGTGTGGCCTCTGTGCACGTGGACTGCAGCTCAGCCTCCTCCCAGCCTCTGGGGCCCCGACGACCCATGAGGCCTGTGGGCCATGTATTTCTAGGCTTGGATGCTGAGCAGGGCAAGCCTGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
PF0221019=Laminin_G_2=PU(17.6=45.2)
C2:
PF0221019=Laminin_G_2=PD(80.6=97.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGACTCAGCCTCATGAAGA
R:
GTCCAGCCACACTCAGCATC
Band lengths:
245-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)