RnoEX6023548 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148261566-148263213:+
Coord C1 exon
chr5:148261566-148261683
Coord A exon
chr5:148262555-148262678
Coord C2 exon
chr5:148262947-148263213
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTTCTCCACTATAGACG
3' ss Score
8.75
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTTCAACCTAATCCGCAGGCTGAACCTTATGAAGACATCCGCCATCAAAAAGATCCGCAACCCCAAGGGGCCTCTCATCTTGCGACTGGGGGCTGCCCCACTGACCCAAGCAACTCG
Seq A exon
ACGAGTGTTCCCTCGGGGCCTCCCCGAGGAGTTTGCCCTGGTCCTGACGGTCCTTCTGAAGAAACACACCTTCCGGAATACATGGTACTTATTCCAAGTGACTGACGCAAATGGGTACCCACAG
Seq C2 exon
GTCTCCTTGGAAGTCAACAGCCAGGAGCGGACTCTAGAGCTCCGGGCACAGGGCCAAGATGGTGACTTTGTGTCCTGCATCTTCCCAGTGCCTCAGCTCTTCGATCTGCGTTGGCACAAGCTGATGCTGAGCGTGGCAAGCCGTGTGGCCTCTGTGCATGTGGACTGCGTCTCGGCTTCCTCCCAGCCTCTGGGGCCCCGGCAGCCCATCCGGCCTGGGGGACATGTGTTTCTGGGCTTGGACGCTGAGCAGGGCAAGCCGGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475-'9-7,'9-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF0221019=Laminin_G_2=PU(16.7=45.2)
C2:
PF0221019=Laminin_G_2=FE(77.2=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTGACCCAAGCAACTC
R:
CAGAAACACATGTCCCCCAGG
Band lengths:
255-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]