MmuEX6096414 @ mm10
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:130051817-130053520:+
Coord C1 exon
chr4:130051817-130051934
Coord A exon
chr4:130052852-130052975
Coord C2 exon
chr4:130053254-130053520
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTTTTCCACCACAGACG
3' ss Score
10.3
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTTCAACCTAATCCGCCGACTGAACCTCATGAAGACATCTGCCATCAAGAAGATCCGCAACCCCAAGGGGCCACTCATCTTGAGGCTGGGGGCTGCCCCAGTGACCCAACCAACTCG
Seq A exon
ACGAGTGTTCCCTCGAGGCCTCCCAGAGGAGTTTGCCCTGGTCCTGACAGTGCTTCTGAAGAAACACACCTTCCGGAACACATGGTACTTGTTCCAAGTGACTGATGCAAATGGGTACCCACAG
Seq C2 exon
ATCTCCTTGGAAGTCAACAGCCAGGAGCGGAGTCTAGAGCTCCGGGCACAGGGCCAAGATGGTGACTTTGTGTCCTGCATCTTCCCAGTGCCCCAGCTCTTCGATCTGCGTTGGCACAAGCTGATGCTGAGCGTGGCAGGCCGTGTGGCCTCTGTGCATGTGGACTGTGTCTCAGCTTCCTCCCAGCCTCTGGGACCCCGGCAATCCATCCGGCCTGGGGGACATGTATTTCTGGGCTTGGACGCTGAGCAGGGCAAGCCGGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690-'1-15,'1-8,11-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0221019=Laminin_G_2=PU(16.1=42.9)
C2:
PF0221019=Laminin_G_2=FE(78.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCATCAAGAAGATCCGCA
R:
CACAGTCCACATGCACAGAGG
Band lengths:
248-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types