BtaEX6012388 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122559976-122561642:+
Coord C1 exon
chr2:122559976-122560093
Coord A exon
chr2:122560941-122561064
Coord C2 exon
chr2:122561376-122561642
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTGTTCTACCCCCAGACG
3' ss Score
10.41
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTCAACCTCATCCACCGACTCAGCCTCATGAAGACATCTGCTGTCAAGAAGATCCGAAATCCCAAGGGACCATTCATCTTGCGACTGGGAGCAGTCTCAGTCACCCAGCCCACTCG
Seq A exon
ACGCGTGTTCCCTCGGGGCCTTCCCAGTGAGTTTGCCCTGGTGCTGACACTATTAATGAAGAAACACACCCACCGGAACACGTGGTATTTGTTTCAAGTGACCGATGGAGACGGGTACCCGCAG
Seq C2 exon
ATTTCTCTGGAAGTCAACAGTCAGGAGCAGAGCCTGGAGTTAAGGACCCGGGGTCAAGATGGTGACTTTGTGTCCTGCATCTTCTCAGTGCCCCAGCTCTTCGACCTGCGTTGGCATAAGCTGGTGCTGAGCGTGGCCGAACGAGTGGCCTCCGTGCACGTGGACTGCATGTCAGCCTCCTCCCAGCCTCTAGGGCCCCGGCGATCCATAGAGCCTGTGGGCCATGTCTTTCTGGGCTTAGATGCTGAGCAGGGCAAACCTGTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0221019=Laminin_G_2=PU(17.3=45.2)
C2:
PF0221019=Laminin_G_2=FE(80.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCAGTCACCCAGCCC
R:
CAGAAAGACATGGCCCACAGG
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]