Special

DreEX6073889 @ danRer10

Exon Skipping

Gene
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr19:39006915-39022604:-
Coord C1 exon
chr19:39022487-39022604
Coord A exon
chr19:39009757-39009880
Coord C2 exon
chr19:39006915-39007196
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCACACGCTTGTCTCCTCAGTCA
3' ss Score
6.58
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTTCAATCTGGCACGCCGATTCTCTCTGCTGATGAACAGTGAGGTCAAGAAAATCCGAAACCCAAGAGGTCCTGTCATCCTCCGCCTAGGCAAAGTCCAACTCATCCAACCCACAAA
Seq A exon
TCAAGTGTTTCCTCATGGACTTCCAGAGGAGTTCACCCTGGTCTTCACCCTGCTGCTAAAGAAGAAATCATTGAATGAGAGCATTTACCTGTTCCAGATATCTGATGAGCACGGATATCCTCAG
Seq C2 exon
TTCTCACTGGACTGGAATGGTCCAGATGGCAACCTGGCCCTGCGGGCGAGAGGAGCCGACCCTGAAGGGCCCATGGTGGGCTGTGTGTTCGACGGAGATGGTGTGGAATCCCTGATGGACAAGCGCTGGCATAAGGTTGCTCTGAGTCTGCAGAGAGAGTCTGCCTCTTTGCACGTGGACTGCAGCTCCATTGAGAACAAGCCTCTGGAGCTCCGCGGCCAGTTGCCCATCAGTGGACACACACTGTTGGGGATGAGGGCTACTGATGCTGCCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009194-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):

C1:
NO
A:
PF0221019=Laminin_G_2=PU(16.4=45.2)
C2:
PF0221019=Laminin_G_2=FE(80.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGATTCTCTCTGCTGATG
R:
TCTGCAGACTCAGAGCAACCT
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]