Special

ENSGALG00000026836 @ galGal4

Biotype
protein_coding
Gene Symbol
COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4921631-4939423:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]



EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
75.95
33.99
0
Alternative 3'ss
3
chr23:4930848-4930850
-
24.05
33.99
0
Exon Skipping
45
chr23:4926735-4926779
-
73.79
94.36
0
Exon Skipping
36
chr23:4927357-4927392
-
94.4
29.82
0
Exon Skipping
36
chr23:4931246-4931281
-
90.65
24.4
0
Exon Skipping
36
chr23:4931139-4931174
-
90.02
26.4
0
Exon Skipping
90
chr23:4930940-4931029
-
77.4
20.37
0
Exon Skipping
117
chr23:4931371-4931487
-
91.17
21.92
0
Intron Retention
372
chr23:4931920-4932291
-
24.33
55.39
0
Intron Retention
260
chr23:4926780-4927039
-
23.78
53.03
0
Intron Retention
1075
chr23:4925660-4926734
-
11.22
37.05
0
Intron Retention
361
chr23:4934595-4934955
-
12.53
38.11
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000084636 COL16A1 1-to-1
Human hg19 ENSG00000084636 COL16A1 1-to-1
Mouse mm10 ENSMUSG00000040690 Col16a1 1-to-1
Mouse mm9 ENSMUSG00000040690 Col16a1 1-to-1
Rat rn6 ENSRNOG00000031475 Col16a1 1-to-1
Cow bosTau6 ENSBTAG00000010050 COL16A1 1-to-1
Zebrafish danRer10 ENSDARG00000009194 COL25A1 1-to-1
Fruitfly dm6 FBgn0259244 CG42342 8-to-1