FBgn0259244 @ dm6
Biotype
protein_coding
Gene Symbol
CG42342
Description
This gene is referred to in FlyBase by the symbol DmelCG42342 (FBgn0259244). It is a protein_coding_gene from Dmel. It has 13 annotated transcripts and 13 polypeptides (12 unique). Gene sequence location is 3R:16502770..16571363. Its molecular function is described by: extracellular matrix structural constituent. It is involved in the biological process described with: extracellular matrix organization. 29 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; viable; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages.
Coordinates
chr3R:16502770-16571363:+
Assembly
GENOMIC BROWSER[edit]
EXPRESSION VALUES[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)
EVENTS AND AS PROFILES[edit]
Associated events[edit]
Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Orthologous genes[edit]
| Organism | Assembly | Gene ID | Gene Name | Orthology Type
|
|---|---|---|---|---|
| Human | hg38 | ENSG00000050767 | COL23A1 | 1-to-8 |
| Human | hg38 | ENSG00000082293 | COL19A1 | 1-to-8 |
| Human | hg38 | ENSG00000084636 | COL16A1 | 1-to-8 |
| Human | hg38 | ENSG00000169436 | COL22A1 | 1-to-8 |
| Human | hg38 | ENSG00000197467 | COL13A1 | 1-to-8 |
| Human | hg19 | ENSG00000050767 | COL23A1 | 1-to-8 |
| Human | hg19 | ENSG00000082293 | COL19A1 | 1-to-8 |
| Human | hg19 | ENSG00000084636 | COL16A1 | 1-to-8 |
| Human | hg19 | ENSG00000169436 | COL22A1 | 1-to-8 |
| Human | hg19 | ENSG00000197467 | COL13A1 | 1-to-8 |
| Mouse | mm10 | ENSMUSG00000026141 | Col19a1 | 1-to-7 |
| Mouse | mm10 | ENSMUSG00000027570 | Col9a3 | 1-to-7 |
| Mouse | mm10 | ENSMUSG00000040690 | Col16a1 | 1-to-7 |
| Mouse | mm10 | ENSMUSG00000058897 | Col25a1 | 1-to-7 |
| Mouse | mm10 | ENSMUSG00000079022 | Col22a1 | 1-to-7 |
| Mouse | mm9 | ENSMUSG00000026141 | Col19a1 | 1-to-7 |
| Mouse | mm9 | ENSMUSG00000027570 | Col9a3 | 1-to-7 |
| Mouse | mm9 | ENSMUSG00000040690 | Col16a1 | 1-to-7 |
| Mouse | mm9 | ENSMUSG00000058897 | Col25a1 | 1-to-7 |
| Mouse | mm9 | ENSMUSG00000079022 | Col22a1 | 1-to-7 |
| Rat | rn6 | ENSRNOG00000000552 | Col13a1 | 1-to-1 |
| Cow | bosTau6 | ENSBTAG00000010050 | COL16A1 | 1-to-9 |
| Cow | bosTau6 | ENSBTAG00000011741 | COL13A1 | 1-to-9 |
| Cow | bosTau6 | ENSBTAG00000015374 | COL22A1 | 1-to-9 |
| Cow | bosTau6 | ENSBTAG00000033515 | 1-to-9 | |
| Cow | bosTau6 | ENSBTAG00000046193 | 1-to-9 | |
| Chicken | galGal4 | ENSGALG00000004286 | COL13A1 | 1-to-8 |
| Chicken | galGal4 | ENSGALG00000005628 | COL9A3 | 1-to-8 |
| Chicken | galGal4 | ENSGALG00000006708 | COL23A1 | 1-to-8 |
| Chicken | galGal4 | ENSGALG00000016292 | COL21A1 | 1-to-8 |
| Chicken | galGal3 | ENSGALG00000004286 | COL13A1 | 1-to-8 |
| Chicken | galGal3 | ENSGALG00000005628 | COL9A3 | 1-to-8 |
| Chicken | galGal3 | ENSGALG00000006708 | COL23A1 | 1-to-8 |
| Chicken | galGal3 | ENSGALG00000016292 | COL21A1 | 1-to-8 |
| Zebrafish | danRer10 | ENSDARG00000009194 | COL25A1 | 1-to-10 |
| Zebrafish | danRer10 | ENSDARG00000025320 | COL21A1 | 1-to-10 |
| Zebrafish | danRer10 | ENSDARG00000077245 | si:dkey-225n22.4 | 1-to-10 |
| Zebrafish | danRer10 | ENSDARG00000095339 | si:dkeyp-44a8.4 | 1-to-10 |
| Zebrafish | danRer10 | ENSDARG00000101592 | prp | 1-to-10 |