Special

ENSG00000197467 @ hg19

Biotype
protein_coding
Gene Symbol
COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:2190]
Coordinates
chr10:71561644-71724031:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
63
chr10:71679421-71679483
+
4.15
23.6
0
Exon Skipping
36
chr10:71634884-71634919
+
71.26
87.63
0
Exon Skipping
27
chr10:71637795-71637821
+
69.28
58.52
0
Exon Skipping
51
chr10:71640259-71640309
+
81.67
30.15
0
Exon Skipping
87
chr10:71712638-71712724
+
79.08
81.93
0
Exon Skipping
78
chr10:71713704-71713781
+
9.76
59.94
0
Exon Skipping
153
chr10:71690156-71690308
+
95.43
23.61
0
Exon Skipping
45
chr10:71692316-71692360
+
11.14
36.49
0
Exon Skipping
42
chr10:71695106-71695147
+
79.1
72
0
Exon Skipping
36
chr10:71700744-71700779
+
20.79
47.87
0
Exon Skipping
57
chr10:71657231-71657287
+
41.71
94.39
0
Exon Skipping
66
chr10:71658453-71658518
+
21.7
99.45
0
Intron Retention
3120
chr10:71655333-71658452
+
8.18
50.44
0
Intron Retention
3985
chr10:71658519-71662503
+
8.12
49.15
0
Intron Retention
5539
chr10:71707099-71712637
+
18.02
47.39
0
Intron Retention
4035
chr10:71712725-71716759
+
10.65
37.03
0
Intron Retention
5111
chr10:71649197-71654307
+
8.14
40.74
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000058806 Col13a1 1-to-1
Mouse mm9 ENSMUSG00000058806 Col13a1 1-to-1
Rat rn6 ENSRNOG00000000552 Col13a1 1-to-1
Cow bosTau6 ENSBTAG00000011741 COL13A1 1-to-1
Chicken galGal4 ENSGALG00000004286 COL13A1 1-to-1
Chicken galGal3 ENSGALG00000004286 COL13A1 1-to-1
Zebrafish danRer10 ENSDARG00000091398 COL13A1 1-to-1
Fruitfly dm6 FBgn0259244 CG42342 8-to-1