Special

ENSG00000197467 @ hg38

Biotype
protein_coding
Gene Symbol
COL13A1
Description
collagen type XIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr10:69801931-69964275:+
Assembly
hg38
Other assemblies
hg19

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
83.16
67.6
0
Alternative 3'ss
89
chr10:69880414-69880502
+
16.84
67.6
0
Exon Skipping
36
chr10:69875128-69875163
+
66.78
86.56
0
Exon Skipping
27
chr10:69878039-69878065
+
54.08
64.33
0
Exon Skipping
51
chr10:69880503-69880553
+
80.82
33.35
0
Exon Skipping
87
chr10:69952882-69952968
+
79.55
81.93
0
Exon Skipping
78
chr10:69953948-69954025
+
9.88
59.94
0
Exon Skipping
153
chr10:69930400-69930552
+
95.97
19.69
0
Exon Skipping
45
chr10:69932560-69932604
+
12
32.02
0
Exon Skipping
42
chr10:69935350-69935391
+
79.76
69.9
0
Exon Skipping
36
chr10:69940988-69941023
+
20.84
51.58
0
Exon Skipping
57
chr10:69897475-69897531
+
45.49
99.14
0
Exon Skipping
66
chr10:69898697-69898762
+
26.17
99.05
0
Intron Retention
5539
chr10:69947343-69952881
+
16.89
47.39
0
Intron Retention
4035
chr10:69952969-69957003
+
11.27
37.03
0
Intron Retention
5111
chr10:69889441-69894551
+
9.08
45.21
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000058806 Col13a1 1-to-1
Mouse mm9 ENSMUSG00000058806 Col13a1 1-to-1
Rat rn6 ENSRNOG00000000552 Col13a1 1-to-1
Cow bosTau6 ENSBTAG00000011741 COL13A1 1-to-1
Chicken galGal4 ENSGALG00000004286 COL13A1 1-to-1
Chicken galGal3 ENSGALG00000004286 COL13A1 1-to-1
Zebrafish danRer10 ENSDARG00000091398 COL13A1 1-to-1
Fruitfly dm6 FBgn0259244 CG42342 8-to-1
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