HsaEX0016300 @ hg38
Exon Skipping
Gene
ENSG00000197467 | COL13A1
Description
collagen type XIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr10:69872184-69880553:+
Coord C1 exon
chr10:69872184-69872210
Coord A exon
chr10:69878039-69878065
Coord C2 exon
chr10:69880503-69880553
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTTGCATGTGGCTGCCCCAGGGA
3' ss Score
4.19
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCCCACTGGAAGACCCGGACTCCCA
Seq A exon
GGAGTAAAGGGCCAACCAGGCGAGAAG
Seq C2 exon
GGGTCCCCCGGAGACGCTGGGCTGTCCATCATTGGTCCCCGCGGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197467_MULTIEX1-7/36=4-8
Average complexity
C2
Mappability confidence:
87%=89=97%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.4=100)
A:
PF0139113=Collagen=FE(15.4=100)
C2:
PF0139113=Collagen=PD(17.4=47.1),PF0139113=Collagen=PU(9.8=35.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development