GgaEX0005697 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12099926-12103187:+
Coord C1 exon
chr6:12099926-12099961
Coord A exon
chr6:12100495-12100521
Coord C2 exon
chr6:12103137-12103187
Length
27 bp
Sequences
Splice sites
3' ss Seq
GATGGGTGCCACTGACCCAGGGA
3' ss Score
2.2
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGACAAAGGCGCAATGGGGATTCCTGGGCGGCCG
Seq A exon
GGACTAAAAGGGCAACCTGGAGAGAAG
Seq C2 exon
GGTGCTCCAGGAGAAGCAGGCATGTCTATCATTGGGCCCCGTGGTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.2=100)
A:
PF0139113=Collagen=PD(20.5=47.1),PF0139113=Collagen=PU(11.5=41.2)
C2:
PF0139113=Collagen=PD(20.5=47.1),PF0139113=Collagen=PU(11.5=41.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAAAGGCGCAATGGGGAT
R:
GACCACGGGGCCCAATGATAG
Band lengths:
80-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]