GgaEX0005697 @ galGal4
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr6:10586997-10590258:+
Coord C1 exon
chr6:10586997-10587032
Coord A exon
chr6:10587566-10587592
Coord C2 exon
chr6:10590208-10590258
Length
27 bp
Sequences
Splice sites
3' ss Seq
GATGGGTGCCACTGACCCAGGGA
3' ss Score
2.2
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGACAAAGGCGCAATGGGGATTCCTGGGCGGCCG
Seq A exon
GGACTAAAAGGGCAACCTGGAGAGAAG
Seq C2 exon
GGTGCTCCAGGAGAAGCAGGCATGTCTATCATTGGGCCCCGTGGTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_MULTIEX2-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.9=100)
A:
PF0139113=Collagen=FE(17.4=100)
C2:
PF0139113=Collagen=PD(17.4=47.1),PF0139113=Collagen=PU(10.0=35.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAAAGGCGCAATGGGGAT
R:
GACCACGGGGCCCAATGATAG
Band lengths:
80-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]