MmuEX0012147 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61903090-61908717:-
Coord C1 exon
chr10:61908682-61908717
Coord A exon
chr10:61905254-61905280
Coord C2 exon
chr10:61903090-61903140
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCGTGGGGCTGCCTGTCCAGGGT
3' ss Score
3.81
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGGACAAGGGTGCCATCGGGATGCCTGGACGTGTG
Seq A exon
GGTATCAAAGGTCAACCAGGCGAGAAG
Seq C2 exon
GGTGCCCCTGGAGATGCGGGGATGTCCATCGTCGGGCCTCGAGGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'11-8,'11-7,12-8
Average complexity
C1
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.0=100)
A:
PF0139113=Collagen=FE(16.0=100)
C2:
PF0139113=Collagen=PD(18.2=47.1),PF0139113=Collagen=PU(9.8=35.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGGGTGCCATCGGGAT
R:
GAGGCCCGACGATGGACATC
Band lengths:
73-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types