HsaEX0016309 @ hg19
Exon Skipping
Gene
ENSG00000197467 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:2190]
Coordinates
chr10:71689799-71695147:+
Coord C1 exon
chr10:71689799-71689843
Coord A exon
chr10:71690156-71690308
Coord C2 exon
chr10:71695106-71695147
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGGTATTTTCTAAAGGGA
3' ss Score
5.63
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGGGAGATTGGACTGCCAGGCCCTCCAGGACACGATGGGGAAAAG
Seq A exon
GGACCTCGCGGTAAACCAGGAGACATGGGCCCTCCTGGTCCCCAAGGCCCCCCAGGAAAGGATGGACCTCCAGGAGTGAAGGGAGAAAACGGGCACCCAGGGAGCCCAGGAGAGAAGGGGGAAAAAGGGGAGACAGGACAAGCAGGCTCACCG
Seq C2 exon
GTTCCTGGGCTGCCAGGGCCAGAGGGGCCTCCCGGACCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197467_MULTIEX3-1/6=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=PU(3.6=13.3)
A:
PF0139113=Collagen=PD(37.7=45.1),PF0139113=Collagen=PU(71.0=86.3)
C2:
PF0139113=Collagen=PD(1.6=7.1),PF0139113=Collagen=PU(21.7=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSP00000346553, ENSP00000348695, ENSP00000350463, ENSP00000381936, ENSP00000381938, ENSP00000381940, ENSP00000381941, ENSP00000381944, ENSP00000381945, ENSP00000381946, ENSP00000381947, ENSP00000381949, ENSP00000381949f9774A, ENSP00000381949f9775A, ENSP00000388774, ENSP00000428057, ENSP00000428342, ENSP00000430061, ENSP00000430089, ENSP00000430173
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)