DmeEX0002314 @ dm6
Exon Skipping
Gene
FBgn0259244 | CG42342
Description
This gene is referred to in FlyBase by the symbol DmelCG42342 (FBgn0259244). It is a protein_coding_gene from Dmel. It has 13 annotated transcripts and 13 polypeptides (12 unique). Gene sequence location is 3R:16502770..16571363. Its molecular function is described by: extracellular matrix structural constituent. It is involved in the biological process described with: extracellular matrix organization. 29 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; viable; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 06-12 hour embryonic stages.
Coordinates
chr3R:16550861-16565424:+
Coord C1 exon
chr3R:16550861-16550929
Coord A exon
chr3R:16551795-16551965
Coord C2 exon
chr3R:16565062-16565424
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCCTCGTCCTCACAGGGA
3' ss Score
11.12
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCTGAAGAGATCGGTGACAACGCTGCATGGCGGCACGCTGGGCTATGCGGAGATAGTTGCTGTTAAG
Seq A exon
GGAGAGCCCGGTGAGCCGGGCCCGCCAGGACCTCCGGGCGAAGCGGGACAGCCGGGTGCGCCGGGCGAGCGAGGACCACCAGGCGAAATCGGAGCGCAAGGACCACAGGGCGAGGCCGGACAGCCAGGAGTCGCAGGACCGCCCGGCGTTGCCGGTGCACCTGGCACGAAG
Seq C2 exon
ATATTCGGACCCGGAGGCACCAAAATAGACGAAGACTACGACGATCCGCCGGTGACACTGTTGCGAGGTCCACCTGGACCGCCAGGAATCGCTGGAAAGGATGGACGCGATGGACGGGACGGCAGTAAGGGAGAACCTGGTGAGCCAGGAGAGCCCGGATCTTTGGGTCCACGAGGATTGGACGGACTGCCCGGTGAGCCGGGCATCGAAGGACCACCGGGACTGCCAGGATACCAGGGTCCACCAGGAGAAAAGGGAGATCGCGGTGATATAGGCCCACCGGGATTAATGGGTCCCCCGGGCTTGCCAGGTCCTCCAGGTTACCCTGGCGTCAAGGGGGACAAGGGAGATCGTGGTGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259244_MULTIEX1-4/12=2-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(3.5=13.0)
A:
PF0139113=Collagen=PD(91.5=94.7)
C2:
PF0139113=Collagen=PD(13.1=6.6),PF0139113=Collagen=WD(100=44.6),PF0139113=Collagen=PU(93.7=48.8)
Main Inclusion Isoform:
FBpp0292667
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0289172, FBpp0293542, FBpp0293543, FBpp0307751, FBpp0307752, FBpp0307753, FBpp0307754, FBpp0307755, FBpp0307757, FBpp0307758
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGATCGGTGACAACGCTG
R:
CCAATCCTCGTGGACCCAAAG
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)