GgaEX1016358 @ galGal4
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr6:10599129-10604287:+
Coord C1 exon
chr6:10599129-10599185
Coord A exon
chr6:10603679-10603795
Coord C2 exon
chr6:10604246-10604287
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTAACAAACCTCAGGGT
3' ss Score
5.2
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGTACCTAAGTACCACCCTTGCAGCCCTGCGCTCTAACCAGATCCTTACGCTGAAG
Seq A exon
GGTGAACAAGGACAAGCAGGAATCCAAGGTCCTCCGGGGCCACCCGGCCCGCCAGGGCCTGCTGGACCAGCTGGACCCGAGGGAACCCCAGGACAGCCTGGACCGATTGGGCCACCT
Seq C2 exon
GGCAGAGCTGGAGAACCTGGGAAGCCTGGCAGAGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_MULTIEX4-4/14=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=FE(59.4=100),PF0139113=Collagen=PU(13.8=33.3)
C2:
PF0139113=Collagen=FE(23.2=100),PF0139113=Collagen=PU(2.2=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGTACCACCCTTGCAGCC
R:
CTTTCCATCTCTGCCAGGCTT
Band lengths:
93-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]